Core support for the Y1000+ Project has been provided by the National Science Foundation through the Dimensions of Biodiversity and Rules of Life programs and the Divisions of Environmental Biology and Molecular and Cellular Biosciences (grant nos. DEB-1442148, DEB-1442113, DEB-2110403, and DEB-2110404).

During the project, research in the Hittinger Lab has also been in part supported by the Great Lakes Bioenergy Research Center (U. S. Department of Energy, Office of Science, Biological and Environmental Research Program), U. S. Department of Agriculture (National Institute of Food and Agriculture), Pew Charitable Trusts, Vilas Trust Estate, Alexander von Humboldt Foundation, and the Office of the Vice Chancellor for Research and Graduate Education with funding from the Wisconsin Alumni Research Foundation. Research in the Rokas Lab has also been in part supported by the National Institutes of Health (National Institute of Allergy and Infectious Diseases), the Burroughs Wellcome Fund, the March of Dimes, the Guggenheim Foundation, and the Cornelius Vanderbilt Chair in Biological Sciences. Our collaborators, fellows, and trainees also gratefully acknowledge the support of their funders in their relevant publications.

Computational infrastructure at the University of Wisconsin-Madison has been provided by Wisconsin Energy Institute and Center for High-Throughput Computing; at Vanderbilt University, computational infrastructure has been provided by the Advanced Computing Center for Research and Education (ACCRE).